PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 271535
Common NameSELMODRAFT_271535
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family DBB
Protein Properties Length: 286aa    MW: 30613.5 Da    PI: 4.8209
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
271535genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-07446541
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
               C+ +e+ e+ l C  ++  lC+ C  e H        H++ p
    271535  4 QCDVCEKAEAALVCCADEAALCAACDAEVHAAnklagkHQRLP 46
              6*****************************6678888888877 PP

2zf-B_box292.3e-095489437
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
              ++C+ ++ek   +fC +++ llC+ C +++H++  H
    271535 54 PICDICQEKTGWFFCVEDRALLCRACDVSIHSSnaH 89
              79*****************************76774 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.168147IPR000315B-box-type zinc finger
CDDcd000215.77E-8347No hitNo description
PfamPF006433.6E-5447IPR000315B-box-type zinc finger
SMARTSM003364.4E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8455198IPR000315B-box-type zinc finger
SMARTSM003366.2E-125198IPR000315B-box-type zinc finger
CDDcd000211.20E-85498No hitNo description
PfamPF006433.5E-75489IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRIQCDVCEK AEAALVCCAD EAALCAACDA EVHAANKLAG KHQRLPLSFS GTSPICDICQ  60
EKTGWFFCVE DRALLCRACD VSIHSSNAHA SSHNRFLVTG VRVALSALSA QDFLEVPPVT  120
PQQPRKNASA SGASSSGNSL SANGTPERFE TVSRAEPETV MEKRSTSSTI SEYLTEAVPG  180
WRVDELLNIP DMASGYSLSD IGSSKAEAGN LGEYDWLADL SLFDEQSYAE TFHEVPQMTP  240
STMPASKLPP AKGKSKLGMA VVPEVDDSLL VPDVSFPAKR RRAWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002982070.10.0hypothetical protein SELMODRAFT_271535
TrEMBLD8SFJ70.0D8SFJ7_SELML; Putative uncharacterized protein
STRINGEFJ167380.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.12e-29salt tolerance homologue
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]